rs51279487 SNP Detail

Summary

• ID
  rs51279487
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48406282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGTA CACAGGAAAG AGGAAAGCAA
  T
  TACTGAGGTT CCACCTCGGA TCCCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136454966	ENSMUSSNP2889423	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51279487					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48406282 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	997 bp downstream
Cpgi21716	CpG island 21716	within coordinates
Gm5617	predicted gene 5617	460 bp upstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	within coordinates
Rr195326	regulatory region 195326	1719 bp proximal
Rr206379	regulatory region 206379	within coordinates
Rr401354	regulatory region 401354	236 bp upstream
Tssr2862	transcription start site region 2862	890 bp downstream
Tssr84988	transcription start site region 84988	67 bp upstream
Tssr84989	transcription start site region 84989	90 bp upstream
Tssr84990	transcription start site region 84990	229 bp upstream
Tssr84991	transcription start site region 84991	279 bp upstream
Tssr84992	transcription start site region 84992	386 bp upstream
Tssr84993	transcription start site region 84993	424 bp upstream
Tssr84994	transcription start site region 84994	921 bp upstream
Tssr89390	transcription start site region 89390	574 bp upstream
Tssr89391	transcription start site region 89391	555 bp upstream
Tssr89392	transcription start site region 89392	525 bp upstream
Tssr89393	transcription start site region 89393	within coordinates
Tssr89394	transcription start site region 89394	284 bp downstream
Tssr89395	transcription start site region 89395	292 bp downstream
Tssr89396	transcription start site region 89396	339 bp downstream