rs51279492 SNP Detail

Summary

• ID
  rs51279492
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:104816556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTAGCTAT CCATTATTCT
  CAGCACCTTG AGCAGCCATG AGTCTCTCTG CCTTCACCAC CACTCACAAA GCACTTCTCT
  GATTAGGACT CAGAGTAGCA CTTATCTAAG AGTATAACAA AAAATATTTA AAGGGAGTTT
  GGGACCATGT CAATTTAGCT GAATATCAAT AGTAAACTCA CACACTCCCC AAACCCATAC
  A
  AAAGCCTCCT CGGCAGTGAG TTTTTAACTG AGGATAGAGT ACCAACCATG AAGTCCTCCT
  TATGGAGCGA GCCTAAAATC CAGTGTAAGA ATGATTAGTT ATCACCAAAC TCACTGTACC
  ACCGTTGTCT CTGTTACACA TCTTGTGTGG CATGTCGGCA TTGTGGTTCA TAAAGATCAC
  AGCTGGATAA GACCACTGAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136903104	ENSMUSSNP3206717	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss323171212	CHEV_9_104841687	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51279492					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:104816556 () rs orientation: forward

Symbol	Name	Function Class
Cpne4	copine IV	within coordinates
Rr202430	regulatory region 202430	1101 bp proximal