rs51279798 SNP Detail

Summary

• ID
  rs51279798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:37297884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acccctatg atggagcttg agttataggc
  atttgtgagc aaccagacat gtgtgcaggg aactgaattc agggcagtga gtgctcttac
  tgagccatct ctctggctcc TCAGGGAAGT TTTAACGCAT GAAGAAGTGA AATTCAAAAC
  R
  GGACCTAGGA CCACTCGTTC TTTCAAACAG CCTCTGGTTG GGGTTCAGTC ACACCTGTGC
  TTGAGAATTG GGGCTGCTCA GCTTTTGGGC ATCTTTTTCT AAGGAAAACA AATACATCAT
  CACCTAACCT TGTAGAGGCC CTTCTTACTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148937626	ENSMUSSNP3887685	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss319691062	CHEV_1_37315648	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51279798					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37297884 () rs orientation: forward

Symbol	Name	Function Class
Cnga3	cyclic nucleotide gated channel alpha 3	within coordinates
Gm69908	predicted gene, 69908	1554 bp downstream
Rr409496	regulatory region 409496	149 bp distal