rs51281745 SNP Detail

Summary

• ID
  rs51281745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68110274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTAGAGT GGTGCAGAAG
  AGGACAATTG TCTCCAAAGA ACTACTTAGA ACTGTCAGCA AGAGAGATAG GAAGTAGATC
  TCGGCTTCCC AACTTCCTAT ACAGCCTTTC CAGTGTCCTT CCCTACCTAC TTACAAAACA
  GCAAATGGTT TAAAGTTTCT AAAGGGCTAT TGAAACTGGG GGGGGGGGAG GGGAATGGGG
  R
  GTGGAAAGAG CAACAGTCAA AGCACAGTTT GTCTTTGTGC GTCTCACTGC AGTGCCAGAG
  ATCGACCTTC TGGGTATCAG GTGCCCTTGA TTCTGCCACA CCCTGCTTTA ATCATCCATG
  AGCCCAGCCT TACCTGCTGG TAACCTGATG GCCTTCTGCT TTGCCCAAAT GTTAGAAGGA
  TGGATTTACA GCTAAATCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135261266	ENSMUSSNP3100318	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320790971	CHEV_3_68006863	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51281745					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68110274 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577984	regulatory region 577984	1422 bp distal
Rr577985	regulatory region 577985	297 bp distal
Schip1	schwannomin interacting protein 1	Intron