rs51282637 SNP Detail

Summary

• ID
  rs51282637
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115093920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGTCTCTA AAAGGATCAA
  TCTAGCATGG AAACTACTTT ATGCTTTTAT AAGTAACCCA ATCATGCAAA ATAATGTATC
  TAGTTTATAG GATGCAAGAG CAATCTCCTA TCTTGGTAAA TCTTTACCTG TCACAAATAT
  AAAATCATAC ATCTTTTTAT TAATTCCAAT AGTTTGGATC AAATCCACCA AAACTACGTA
  Y
  GATAGTAATT AAATAATTTA AGCAAATGTA ATCAGGAAAT TGTGCTACAA ATATTAAAGT
  ATTATTCCAA ATAGTATATG GTAATAAAAA CCCTATTAGA CAATCAAAGT AGGAGTGTCA
  GAATAAGTAT TACAAACATG TTACATAAGA AAATTCAAAG CTGTTATGAG AACCCTTGAC
  CACTATCTAT GTTGTGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61227206	NES16842644	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C	T	T	T	T	T	T	T	C
ss137005368	ENSMUSSNP4906612	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51282637					SNP	C	C	C	T	C	C	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61227206	NES16842644	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115093920 () rs orientation: forward

Symbol	Name	Function Class
Rr193052	regulatory region 193052	1120 bp distal
Rr193053	regulatory region 193053	1881 bp proximal
Stt3b	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	within coordinates