rs51288678 SNP Detail

Summary

• ID
  rs51288678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118573936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACTTTGG GATTTCCCCT
  CAATAGAGGG GAGGGGAGTC CGAAAGGAGA AAGGTAGGGT GGAGGATTCC TGGAGAAACT
  TCATCTACAT AACAAGGAGA AAGAGAAAGC ATGGAGGGAT GCCCCCAGGG TGGCGTTTAG
  AGCTTAAATT TAGGAAAGCG CCCAAGGATT GAATTCTGCC TGGCTGCACT GAAGGCACCA
  Y
  CATAGCCAGA AGAGACTTGT GGGCACCCGT AGCTTCTACA TCACGTCTTT ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAA TCTCTAGCTA AGCCGAAGAG
  AACTTGGCCT GTGGACTCTG CCTGTCATGC CAACATTCTG TGCCTCAGTT TTCTCATCTG
  TGGTGTCGTT GTTGTTAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60830996	NES16020031	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51288678					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60830996	NES16020031	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118573936 () rs orientation: forward

Symbol	Name	Function Class
Rr366840	regulatory region 366840	within coordinates
Rr618904	regulatory region 618904	1960 bp distal
Rr618906	regulatory region 618906	134 bp distal
Rr618907	regulatory region 618907	684 bp proximal
Tssr48424	transcription start site region 48424	23 bp downstream
Tssr48425	transcription start site region 48425	1614 bp upstream
Tssr48426	transcription start site region 48426	1639 bp upstream
Tssr52899	transcription start site region 52899	1023 bp upstream