rs51289455 SNP Detail

Summary

• ID
  rs51289455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112574104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTGTTCT GGCAAATATT
  CTTCCTGATA TGCCAAAATT CACTTAAAGT ATTTCTATTA AGCAAAATCT ATAACTCAAG
  GCTTTCTCGT GTTTTTCCAT TTATAGACCC TTTTCCACCT AAGAAATTTT TACATGGCAT
  ATAGAACAGG TATACAAACA AGGCATATAA AACAGGTATA CAAACCAAAC TATTTTAAAG
  Y
  CGTCCTTTAG CACCATATTC TTTTTTAATT TAATTTTATT TGTAATTCAT TTTTTACACT
  CCATATTCCA TTCACCGCCC CGCCCCTCCC ACCCTCCAAC TTCTCCACAT CCCACACCCC
  CTTCCCACCA CGCCCATCTC CACATGGAGG CCCCCACCCT TCACCCCAAG AATCATATTT
  TTAAAAGACG AAAGCAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss145238547	ENSMUSSNP5871180	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs51289455					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112574104 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	within coordinates
Gm59881	predicted gene, 59881	1784 bp upstream
Gm59893	predicted gene, 59893	1258 bp downstream
Rr369776	regulatory region 369776	1931 bp upstream
Rr395952	regulatory region 395952	627 bp upstream
Rr486369	regulatory region 486369	1620 bp distal
Rr486370	regulatory region 486370	363 bp proximal
Rr486371	regulatory region 486371	463 bp proximal
Rr486372	regulatory region 486372	1305 bp proximal
Rr486373	regulatory region 486373	1806 bp proximal
Tssr121117	transcription start site region 121117	578 bp upstream
Tssr121118	transcription start site region 121118	657 bp upstream
Tssr124051	transcription start site region 124051	469 bp downstream