rs51289682 SNP Detail

Summary

• ID
  rs51289682
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127272183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTATTAT CAGTGACATT
  ACACAAGGGA ACTTTTTTTT TTTTTTGGTT TTTCAAGACA GGGTTTCTCT GTATAGCCCT
  GGTTGTCCTG GAACTCACTT TGTAGATTCA GAAATCCGCC TGCCTCTGCC TACCAAGTGC
  TGGGATTAAA GGTGTGTGCC ACCACGCCCG GCCTGGAACT ATTCTTTAAG ACCCTAAAGA
  W
  AATGGTGAGA AGCCCATGTC TGTTATGAAG AAGAGTTGGG ATTGCAAATG TATCAGGGCG
  GCTAACTTGT CTTCAAATGC CTTTACATGC CCTTAACTCA GTTCTTCACA GGGCACTTCC
  TCTCACTACT AGTCACTCCA AATATTGCAA AAGGAAAGGA TTCCCAGGTG TGTCTAGCCT
  GTGGCTCAAC AGCCACATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135864372	ENSMUSSNP460480	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320954468	CHEV_3_127181452	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51289682					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127272183 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	1645 bp downstream
Gm43355	predicted gene 43355	901 bp downstream