rs51289766 SNP Detail

Summary

• ID
  rs51289766
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:49316319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAGAAAA GTGGCAATTT
  CCATGCCAGG TAATTTCCGG GTCATGGGCT GTTCCTCCAT CCCTTCCCTG CCAACTGCTC
  TCACAGACTG ACCTGTCTCT GCCCTGCCCT GAGCTCTGGA CTCTAGCAAA AATCCTGACC
  ATGTCAGGAG AAGGCAACTA GATAGAACAC AGAAACGCAC ACTGGACACG GTACCTTCTT
  Y
  CCTCAGGACA CGTGACAGCT CCTCATGTGC TGAGAGAGGC AACCTGTGGT CACTCCTCAC
  TGAGGGAAGT GGGGAAAGGA AGACACTGAG GAGCGTGTGG TTAGTCCTGG CCCTTCATCT
  AACCACACTG GATGGGCCCC TTTCCCACCC CTGTTATTGC AGATGACTAG ACAGGGAAGC
  TAGATACTGA AGGTATTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss148995256	ENSMUSSNP2027752	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs51289766					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:49316319 () rs orientation: forward

Symbol	Name	Function Class
Gm40942	predicted gene, 40942	within coordinates
Rr479356	regulatory region 479356	1380 bp distal
Rr479357	regulatory region 479357	678 bp distal