rs51290620 SNP Detail

Summary

• ID
  rs51290620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35963920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCAGACCC CACTCGCTGC CCTGTGTATA GGGACGTTCA
  TAACTGCCCC GAGAGCCTCG GACCACGCGT GGCCTTGCCT CCCCTTAGAC TTGGAAGAGG
  Y
  GGCGGCTACT TCTGTTTTTT CCCCTCGGGC TGCTCGCCCC CACTGCCTGC AGGGTGCCTG
  GCGGGCTGAT CAAGTTTGAC CTTTTTTTTT TTTTTTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146946985	ENSMUSSNP398973	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss325584012	CHEV_18_35990521	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51290620					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35963920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9844	CpG island 9844	within coordinates
Cpgi9845	CpG island 9845	431 bp proximal
Cpgi9846	CpG island 9846	766 bp proximal
Cxxc5	CXXC finger 5	within coordinates
Gm29417	predicted gene 29417	within coordinates
Gm50371	predicted gene, 50371	within coordinates
Rr352723	regulatory region 352723	within coordinates
Rr370361	regulatory region 370361	1283 bp upstream
Tssr150567	transcription start site region 150567	1999 bp downstream
Tssr150568	transcription start site region 150568	1111 bp downstream
Tssr150569	transcription start site region 150569	1072 bp downstream
Tssr150570	transcription start site region 150570	1046 bp downstream
Tssr150571	transcription start site region 150571	1028 bp downstream
Tssr150572	transcription start site region 150572	1016 bp downstream
Tssr150573	transcription start site region 150573	756 bp downstream
Tssr150574	transcription start site region 150574	659 bp downstream
Tssr150575	transcription start site region 150575	504 bp downstream
Tssr150576	transcription start site region 150576	104 bp upstream
Tssr152918	transcription start site region 152918	730 bp upstream