rs51291102 SNP Detail

Summary

• ID
  rs51291102
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:15800551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCTCAA AATGCTCTGA
  TGGGATCTGG CAACATGGTT CAGTAGGTAT TTGTCACCAA ATTGGATAAC CTGCATTTGA
  TTCCTGGGAC ACACATGAAA AATTATACTC TGACCTCCAT ATGTGTGCTG TGGCACAAAT
  GAGTTTGTTC TTCCATCCAA GATATAAAAT TAAAAAAAAA AACATAAAAA AATGTTAAGT
  K
  CAAGACTTTG CACCTAAGAG AGCTCACTAC AGCTGAGGTT ACTGAAATAA GAACTGTACA
  AGATTGTAGA CTGAAAGTCA ATATTTCATC ATGGATGTGT TATTGCTTGC TGTGAAGGCT
  GGAGTGCCAT TTTCTTCAGT AGTATAACCA CTGATAAACT GCCCATGCTC CAGTAAATAT
  TCTCTCTCAC CCATGCTAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63665028	NES17054813	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51291102					SNP	G	G	G	G	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63665028	NES17054813	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:15800551 () rs orientation: forward

Symbol	Name	Function Class
Rr404696	regulatory region 404696	1956 bp upstream
Rr512189	regulatory region 512189	1520 bp proximal
Spidr	scaffolding protein involved in DNA repair	within coordinates
Tssr137231	transcription start site region 137231	1790 bp upstream