rs51291396 SNP Detail

Summary

• ID
  rs51291396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43877859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGAGG CAGGAGGATT
  TCTGAGTTTG AGGCCAGCCT GGTCTACAGA ATAAGTTCCA GGACAGCCAG GGCTACACAG
  AGAAACCCTG TCTCGAAAAA CCAAAACCAA AAGAAACAAA CAAACAAAAC CCAAAGAAGG
  CAGTCATAGT CACAGGTTCG GGAGTTTAGC AAGGCAAAAG AATGAACAAA CATCATGGGA
  Y
  TGCAAGTTCA ATGTAGACAG AAAAACATGG TTTGCAAGAT ACACTGGTCC TAGGGAACAG
  ACACTTCTTG TAGGGAATGG AGACTTAATA ACAATGTATA ACAATGTGGC TCCTGTTTCC
  TTTTCACTGT TCCCGGTGGG GCACAGCCCA GTCTTTGAGA AGCAGAGGTT TAATCATAAA
  CAGGAATGAT CCTGGATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62747693	NES17340478	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51291396					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62747693	NES17340478	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43877859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	1355 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	1150 bp upstream
Rr527121	regulatory region 527121	811 bp proximal
Rr527122	regulatory region 527122	1312 bp proximal
Tssr144685	transcription start site region 144685	1019 bp upstream
Tssr144686	transcription start site region 144686	1128 bp upstream
Tssr144687	transcription start site region 144687	1184 bp upstream
Tssr144688	transcription start site region 144688	1322 bp upstream
Tssr144689	transcription start site region 144689	1479 bp upstream
Tssr144690	transcription start site region 144690	1514 bp upstream
Tssr144691	transcription start site region 144691	1534 bp upstream
Tssr144692	transcription start site region 144692	1590 bp upstream
Tssr144693	transcription start site region 144693	1638 bp upstream
Tssr144694	transcription start site region 144694	1673 bp upstream
Tssr144695	transcription start site region 144695	1721 bp upstream
Tssr144696	transcription start site region 144696	1738 bp upstream
Tssr148130	transcription start site region 148130	1536 bp downstream