rs51291415 SNP Detail

Summary

• ID
  rs51291415
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77968057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAAGAGTT GGGCCATTTG CATTTTTTTA TGATCTTGGG
  TTCTTCTGGG AGTGACAGGG AGAGTGGGTG GCTGGGTGCA GGAAGTCATG TCATGGCAGA
  S
  CTGGAAAAGT GTCACTCCCG GCTCTTCCTG CTATCGATGA CATTACTGTC AGTTATGAAA
  CAAATCAGGT TTTCACAGCA CTCTCTGGCG ATTTGTTAAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss63192726	NES17468870	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs51291415					SNP	C	C	C	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63192726	NES17468870	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77968057 () rs orientation: forward

Symbol	Name	Function Class
Gm58860	predicted gene, 58860	550 bp downstream
Pstpip2	proline-serine-threonine phosphatase-interacting protein 2	within coordinates
Rr541208	regulatory region 541208	798 bp distal
Rr541209	regulatory region 541209	117 bp distal
Tssr152064	transcription start site region 152064	833 bp downstream
Tssr152065	transcription start site region 152065	816 bp downstream
Tssr152066	transcription start site region 152066	1831 bp upstream
Tssr152067	transcription start site region 152067	1863 bp upstream
Tssr152068	transcription start site region 152068	1893 bp upstream
Tssr152069	transcription start site region 152069	1994 bp upstream