rs51293378 SNP Detail

Summary

• ID
  rs51293378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4623319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAATGTTGGC CCAAGAACTT CCTCAATCTG GGGACTACGA
  TGACAGAATT TTCTCAGTAG TTGATTGAGT CCTTTGAAAA CCAGTGGTCA AGTAATGCCA
  Y
  CAGCATCCAA CAGATACCCA AATTGTAGTT TTCATAAGTC TAGAGTCTCC AAATCTTCCA
  CTAGGCAGAG TCTTGACAGC TTGCCTAAAA TAAGTTTATT A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss132932333	ENSMUSSNP3747302	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51293378					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4623319 () rs orientation: forward

Symbol	Name	Function Class
Casd1	CAS1 domain containing 1	within coordinates
Tssr54761	transcription start site region 54761	583 bp upstream
Tssr54762	transcription start site region 54762	636 bp upstream