rs51293464 SNP Detail

Summary

• ID
  rs51293464
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58411567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAAGGTCT CACTGTGTGG CTCTGGAGGG ACTGGAATTC
  ACTGTGTAGA CCAGGCTGGC TTAAATTTGT AATGCAAATT CTGCCTCCCA CGTGCTGGTG
  K
  TGAAGACACG TGGCCCAGTG CCCAGCTAGG AGATTATGTT TTAAAGTTTT TAATCCAGTG
  ATACAAATGG ATTTTTAAAG CTTTTTATTT GGAAACAGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135206868	ENSMUSSNP4158381	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss320783062	CHEV_3_58308068	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51293464					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58411567 () rs orientation: forward

Symbol	Name	Function Class
Gm66340	predicted gene, 66340	797 bp upstream
Rr375034	regulatory region 375034	within coordinates
Rr577237	regulatory region 577237	1919 bp distal
Rr577238	regulatory region 577238	206 bp distal
Tssr29204	transcription start site region 29204	1961 bp downstream