rs51294330 SNP Detail

Summary

• ID
  rs51294330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21573420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCCTGAT GTATTCAGCT
  GCAATGGTTC TGATATTATC TGCTGAATAT CAAGGCAGGG CAACTTTCAC TATATACTGA
  GTCATACAAT AAGATGCAAC ATGTTTCATT TCATTTCCAT ATACTGAACT CCAAGAAAGA
  ATAATCCTGT GCTTTTCCAG TGTAATGTGA CTAGCCTGGA GTTCACTATG TAGACCAGGC
  Y
  AGCCGCAAAC CTGAGATCCG CCTGGCTCTG CCTCCCAAAG ACAACTATTA CAGCATGTGT
  CACTATGCCT GACTTTAGAA AGAATAATTC TTTTTGTTGT TGTTGTTCTT TTTGGTTTTG
  GTTTTTCGAG ACAAGGTTTG TCTGTGTAGC CCTGGATGCC CTGGAACTCA CTCTGTAGAC
  CAGGCTGGCC TCGAACTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146182888	ENSMUSSNP2718899	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss325752825	CHEV_19_21670546	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51294330					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21573420 () rs orientation: forward

Symbol	Name	Function Class
1110059E24Rik	RIKEN cDNA 1110059E24 gene	1257 bp downstream
Gm38486	predicted gene, 38486	within coordinates
Gm59243	predicted gene, 59243	within coordinates
Rr364167	regulatory region 364167	1982 bp proximal