rs51294675 SNP Detail

Summary

• ID
  rs51294675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172196474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGC AATAACTTTC TATATGCCAT
  Y
  TTACTTCCTG CAGATGACGT CGGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120013131	PARCsnp_1.08833	PARC_SEQ	INBRED	f	SNP		T	C
ss146189502	ENSMUSSNP2152705	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320124582	CHEV_1_174299038	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs51294675					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172196474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	22 bp proximal
Cpgi1046	CpG island 1046	877 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	Intron
Rr423550	regulatory region 423550	61 bp proximal
Tssr10190	transcription start site region 10190	1566 bp upstream
Tssr10191	transcription start site region 10191	1777 bp upstream
Tssr10192	transcription start site region 10192	1957 bp upstream