rs51296239 SNP Detail

Summary

• ID
  rs51296239
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3810221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCTAGGA GAGAAGAAGG
  CATGAACAAG AAGGGCACAG AGGATTTACA GGCAGTGGAA CTATTCTCTA TACTGTACAA
  TGATGGATGT GTGCACTTGC CTAGACCTGT AGAATGTCTG ATGCTTGGGT GCACATGAGT
  CAGGTATGAA GATGTGTGTC TATAATCCCA GCATTGGAGA GGGAATGGCA AAAGGTCAGA
  T
  GTTTAAGGAC AGGCTAGGCT AGATGATAAT CCATTTTAAG AAAACATCAA GCTCTTTATT
  GCCAACTCGA CTGGGTTTGG AATCACCTAG AAGACACATC TTTGTATCTG TAAAGGCATT
  TCTAGAGAGG TTTAACCAAG GAGGCAAGAC CCATCCTGAA GGTGAGTAGC ACCATCCTAG
  GGACTGGGGA CACAGACTGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146263093	ENSMUSSNP7013435	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51296239					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3810221 () rs orientation: forward

Symbol	Name	Function Class
Gm13180	predicted gene 13180	within coordinates
Gm36031	predicted gene, 36031	within coordinates
Rr550967	regulatory region 550967	1213 bp proximal
Tssr15925	transcription start site region 15925	1011 bp upstream