rs51296596 SNP Detail

Summary

• ID
  rs51296596
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155095711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCCTCCTC GGCCCTGGAA ATAAAAAGGT CCAGTGCCTT
  AGACCAGCAC TTCCCACCCT GGGGGTCGAG GCCCTCTGGG GGTTGAACAA CCTTTTCACA
  S
  GGGTCACATA TCAGATCCTG CACATTTTTA CATTGACATT TACATTATGA TTCATAACAG
  TAGCAAAATT TGTTACAAAG TAGCAACAAA AATTATTTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145777657	ENSMUSSNP1362753	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51296596					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155095711 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC034090	cDNA sequence BC034090			Intron
				Noncoding-Transcript-Variant
Rr420977	regulatory region 420977			1903 bp distal
Rr420978	regulatory region 420978			1566 bp distal
Rr420979	regulatory region 420979			697 bp distal