rs51297340 SNP Detail

Summary

• ID
  rs51297340
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125219494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAATGAA TTTCAATACA
  AGGAAAAGCA ATTCATTTTA TGTTATATAA AGCAAAAATA ATAGATAAAT TTTATCTATA
  AAAATTTATC TATTGTGCAA CCAATGCTTG AGAAAATTTA TTTCACCATA TTTGATTATA
  GCTTGTTCCT TATTAAAAAA AATCATCAAA GTATAAAAGT TCACAAAAGT TAGCTACGTG
  W
  TTAGGCAAGC TGTGCATTAA GAAAAACACG AAAACCTGTG CAAAAACAAA TGCAAATTCT
  GACGCAGCAG ACCACATAAG CGATATACAA TTAGCGGCTC CCTAAGAAAG TGAGAAATAG
  AATCGACTAA AATGTATTAG GTATGAAATT AAGACTTAAT TAATGTTTTA ACATTAAGAC
  TCCCTGATCT CTCCTAATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135808268	ENSMUSSNP5800832	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss320936338	CHEV_3_125128763	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51297340					SNP	A	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125219494 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584610	regulatory region 584610	332 bp proximal