rs51298904 SNP Detail

Summary

• ID
  rs51298904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:6571322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACAGTAA TAAATCTTTT
  CCCTTCAATT ATGAAAACAA CAAAAAAGCT TTATCGTTTT CCCCTCTTGG GAAAGTGGAG
  CGTGCACGGA TGACACATTA TTTTTCAGAA AATAAAAGTC CGAGTAACCC AAAGCAGATA
  TCTATTAACA TTTTAGTCAA TGATTTTGAA AACATATCAC TAGACAGTGT AGATGACATT
  Y
  CTGTGAGTGG CTCCCTGGCA CAGCCTCCTC GCTCTCCCTT CCTGCCAGAG CAGGTGGGAC
  ACTTCCCTTA TCGCTTGGCA GCAACTTTAC TCCTTCATGA AAATGTTCAC TGCTCCTTTG
  CCCACCTAAT GCCTCTTGAC TGGCTACTCC CTGTCTCCCT TCTCCATCAG TGAAATTCTC
  ACTAAGTGCC TTTAATGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62615389	NES17311459	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51298904					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62615389	NES17311459	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:6571322 () rs orientation: forward

Symbol	Name	Function Class
Fyb1	FYN binding protein 1	within coordinates
Gm62041	predicted gene, 62041	760 bp downstream
Gm62055	predicted gene, 62055	809 bp downstream
Tssr130496	transcription start site region 130496	1571 bp downstream
Tssr130497	transcription start site region 130497	1529 bp downstream
Tssr130498	transcription start site region 130498	1512 bp downstream
Tssr130499	transcription start site region 130499	1488 bp downstream