rs51299021 SNP Detail

Summary

• ID
  rs51299021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:25207406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTTATAT GAAGAGAAAT
  AATCTTCACT TTAAATAAAT GACCAAAAAC TATTGTATAG TAGAAACCAG CTGAATAAAT
  ACCATTGTAA AATATTCTGT CATTATTTTG AATTCATTTC GGGACAACAC CCATATGATT
  CACACTTCTG AAATAATTGA ATTTGAAATA TTTTAACTTT CATTCCACTC TCTGTCTGTG
  Y
  GCATATGGGT TAAGGAAGGG AGGGAGGCGC ATGCCCTGTC ATCCTTGTGG AGATCGGAGA
  AGAGTTTTGT AGAATCGGTT CTCTTTCTGC TTTTTCTTTT TCTACTTTGC ATGGTAGGCA
  CCTTTACTTT CTTTGTTCCC CTGTAATAGG TTTTTGTATT TAAATACGGA CAAGAAAGCA
  CCAGAGGTCT CATTTAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136234440	ENSMUSSNP5454611	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51299021					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:25207406 () rs orientation: forward

Symbol	Name	Function Class
Septin7	septin 7	within coordinates
Tssr84136	transcription start site region 84136	1692 bp upstream
Tssr84137	transcription start site region 84137	1717 bp upstream
Tssr84138	transcription start site region 84138	1765 bp upstream