rs51299493 SNP Detail

Summary

• ID
  rs51299493
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86829388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATTCTATT TCTAATGCAA ATGAACTGGG AGAAGGCAGG
  CTTCAAGGAG GCAACTACTA ATTAATCTGG GTTGCTTTAT GGTTTAAAGT TTATAGAACC
  A
  TAACACGTTT TCCTCTTTCG TGCAAGTGCA GAATGTCTAC AGTGAGATGT TTAGAACTGG
  CATGTATTTC CCTCGCTGGG ATATTCCCTG CATCTCAGA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135451288	ENSMUSSNP2122380	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320830121	CHEV_3_86726003	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51299493					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86829388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13328	CpG island 13328	972 bp distal
Cpgi13329	CpG island 13329	479 bp distal
Dclk2	doublecortin-like kinase 2	1229 bp upstream
Rr77821	regulatory region 77821	587 bp distal
Tssr33913	transcription start site region 33913	1733 bp upstream
Tssr33914	transcription start site region 33914	1691 bp upstream
Tssr33915	transcription start site region 33915	1668 bp upstream
Tssr33916	transcription start site region 33916	1546 bp upstream
Tssr33917	transcription start site region 33917	1516 bp upstream
Tssr33918	transcription start site region 33918	1104 bp upstream