rs51300334 SNP Detail

Summary

• ID
  rs51300334
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3646584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTGTTGG GGTTGGTTCT
  TTCCTTCCAC TGTGTGGGTC TTGGAGATGG AACTCAGGTT GTCTGGCTTT ATGGCAATGT
  TGAGCCATGT TATTGACCAC TTTTCTTTTT TTTTTTTTTT CTTTTTTTTT TTTTTTTTAA
  AGATGAGGGC CTCCCAGTAG CCCTGGCTAG CTTTGACAGC AATCACATGG GCCACCATAC
  K
  CAGCTTTTGG TGGGCATTTT GAATCAGGGT GTCCTAGCAC TCACTGGCTT GTTACTGCTT
  CTAGCCTGGG CTGGTGTGAA GCTCCTTTCT CAGTTTCCCA AGGCGAGGAT TACAGCTGTA
  CATGTTGGGC CTGGCTAAGT ACCCTTTAAG TATGGCTGAA CTCAGTATTC TCTTAAGACC
  CTACTCCTTA TGCCCTCTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61076728	NES16055133	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51300334					SNP	T	T	T	T	T	G	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076728	NES16055133	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3646584 () rs orientation: forward

Symbol	Name	Function Class
Camsap3	calmodulin regulated spectrin-associated protein family, member 3	within coordinates
Rr180906	regulatory region 180906	384 bp distal
Rr189485	regulatory region 189485	1817 bp proximal
Rr381636	regulatory region 381636	839 bp upstream
Tssr76064	transcription start site region 76064	60 bp downstream
Tssr76065	transcription start site region 76065	1731 bp upstream
Tssr76066	transcription start site region 76066	1755 bp upstream
Tssr76067	transcription start site region 76067	1770 bp upstream
Tssr76068	transcription start site region 76068	1787 bp upstream
Tssr76069	transcription start site region 76069	1859 bp upstream