TCTGAGACCG AATCTCCCTC CTACCCAAGA GGCCCCGCGA CCGTACCCTA CAGTGACGCC GAATGGGGGG ACTCGACGGT GGCCCGGAGG AGTCAAAAGT GAGCGAGCCT TGAGCCCCGC GTGACTTTTC TCCTTTCTAG TCTGGGTCCT GCCCCTTTTC TCTTCCAACC ACTGCGAGTC CGGCAGTTCA ATGACTAAAA R CTTAGCGACC AGTGGCGCAC GACAGCAGCC ATGCCGCTCG CTCCCGGGAG CCGAGAGGCG GAGTCTGAGG ACACGGGCCA ATTGAGCCGG AGCCCCAGCC GCGGAGCCCG GATGGAGGAG GCTGGGTGGA GGCGTGGGAG CCGGCAAACG TGAAGAGCTC TCGGGCTTCT GCTGTGCCGC AGCGGGGATC TGGATCTGGA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss52694591 | NES15543281 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | G | A | A | A | A | A | G | A | G |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs51301743 | SNP | A | A | A | A | A | A | G | A | A | A | A | A | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss52694591 | NES15543281 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr13:113064102 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi6101 | CpG island 6101 | within coordinates | ||||||
Dhx29 | DExH-box helicase 29 | within coordinates | ||||||
Mtrex | Mtr4 exosome RNA helicase | 188 bp upstream | ||||||
Rr280952 | regulatory region 280952 | within coordinates | ||||||
Rr369777 | regulatory region 369777 | within coordinates | ||||||
Tssr121155 | transcription start site region 121155 | 74 bp upstream | ||||||
Tssr124081 | transcription start site region 124081 | 178 bp upstream | ||||||
Tssr124082 | transcription start site region 124082 | 98 bp upstream | ||||||
Tssr124083 | transcription start site region 124083 | 30 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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