rs51302048 SNP Detail

Summary

• ID
  rs51302048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20886272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACTTTTAT CCTCACCTCC CATCGCCACA ATCTCTATGG
  CTCCCTAGGG CCCAGGCATA CACTAACCTC CCAAGGCCCA TTTGAGGTCG AAACCTGCTG
  Y
  AGTTGCCTCT GGTATATCCT ACAGACCCCC TCCCCACCCC CACACAAACA CTTTTTCCGG
  CAGACTATCT TATCTTTGGA TTTCATTCGA CTGTCACTGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61357547	NES16731723	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51302048					SNP	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61357547	NES16731723	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20886272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21408	CpG island 21408	425 bp proximal
Rr206018	regulatory region 206018	within coordinates
S1pr2	sphingosine-1-phosphate receptor 2	within coordinates
Tssr83937	transcription start site region 83937	936 bp upstream
Tssr88347	transcription start site region 88347	1695 bp downstream
Tssr88348	transcription start site region 88348	1745 bp downstream
Tssr88349	transcription start site region 88349	1786 bp downstream