rs51302109 SNP Detail

Summary

• ID
  rs51302109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:20465364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTCTCT CTCCATGTGA
  ATGTATTAGG TTGAGGACAG GCAGGTAGGG TCATAGAAAG GTGAGACTCT CAGCTTTGTG
  TGGACACCAG GCACCTTATC TCAGTGTACC CTCACAGGGA CCATTTTCAT CCAACAACTC
  CAGAATACAG ATTTATAACC ATAGTAGGGA ATCCTTTCCT CTTTCCTCTT ATAAATCATC
  R
  TCTGGCTTCC TATATGAATA CTATACACAT ATGGAAATAC ATATGTGTAT AGTAATTCCA
  TATGGTAATA CATATGGAAA TATCTAGAAT AAATTTGTAT AAGACCCACC ATGTGCTCAA
  ATGTGGACAT TGCTGGTCCT CAGGTTGGTC TTTTTAATTG GAAAATTAAT ACTAGCATTT
  GTCAATCAAT TTCAGCAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52176232	NES15232406	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51302109					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52176232	NES15232406	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:20465364 () rs orientation: forward

Symbol	Name	Function Class
Pde7b	phosphodiesterase 7B	within coordinates
Rr226877	regulatory region 226877	within coordinates
Tssr96955	transcription start site region 96955	84 bp upstream