rs51302944 SNP Detail

Summary

• ID
  rs51302944
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138154190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCGATGGT ACGCTGATGG TGCTGTTCTC GATGGTGCTG
  GGAAACAAGG GCACCAGACT GCGCCACTTG CTGGCCAGGT TGGGAAGGGA CGATGCGTAA
  R
  CTGAAGAAGT TGGAGGTCCA GGAAATTCAG GGCACAAGTT CTAGTGGCTC TGAGAGAGAG
  AGTACACCAT CACCTCCATA GCAAGAGAGA GAGTACACCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60847388	NES16002783	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51302944					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847388	NES16002783	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138154190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16854	CpG island 16854	62 bp distal
Rr399442	regulatory region 399442	within coordinates
Rr623038	regulatory region 623038	235 bp distal
Rr623039	regulatory region 623039	within coordinates
Rr623040	regulatory region 623040	385 bp proximal
Tssr54073	transcription start site region 54073	188 bp upstream
Zfp113	zinc finger protein 113	184 bp upstream