rs51303783 SNP Detail

Summary

• ID
  rs51303783
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:93613881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCCAGGA CAGCGTTTAG
  AAACTGCACC ACAGACGGAG GATATTTACT GCATGGAAGG GAGTTTTAAC TGGCCAGTAT
  TTTGATTTGA TCAATCATGG AGCCTGTAAA GAAAGGATGT ATTATGCTGT GTGACCACCC
  AGGCAGCCTC AGGGCCCCCG AGGTACCACC TCCATAGATT CTCCTCCCCT CCCCCCACCT
  T
  TAGTAATTGT CCTGGCTAGT TCTATATCAG CTTGACACAA GCTAGAATCA TTTGAGAAGA
  GGGATTCTCA ACTGAGAAAA TGCTTCCATG CGATTCGCCC ATTGGCAAGT CTGTAGTGCG
  TTTTTTTGTT TTTTTTTTTT TGTTTTTAAT CTTTTCTTTT TGGTGGAAGG ATTATTTTAA
  AATATTATTT CTTTTTTTTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145617949	ENSMUSSNP5991268	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs51303783					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:93613881 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lpcat2	lysophosphatidylcholine acyltransferase 2			Intron
				Noncoding-Transcript-Variant
Tssr78766	transcription start site region 78766			1374 bp downstream
Tssr78767	transcription start site region 78767			147 bp upstream
Tssr78768	transcription start site region 78768			196 bp upstream