rs51304779 SNP Detail

Summary

• ID
  rs51304779
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125220680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATGGACT GTAGTTCTTC
  CCCTGGGAGA TCCACAACAA TGACCTTGTG AGACATTATA GTGAGGTTCG GGCAATGAGT
  TTAAAGGTAT TCTGTGATTT AAAATAGTTC CTACAATGAT AGCTACACTT AAAATCAGGT
  GAGAATTTAG ATCTCATTTT GAATTTTCGA ACAAAAAATA AATTCTGAAG GAAAATACAT
  S
  AATGTTTTTT GTTTGTTTGT TTTTTGAGAC AGGGTTTCTC TGAATAGCCC TGGCTGTCTT
  GGAACTCACT TTGTAGACCA GGCTGGCCTT GAACTCAGAA ATCCACCTGC CTCTGCCTCC
  CGAGTGCTGG GATTAAAGGT GTGCACCACT ATTCCCGGCC AGGAAAATAC ATCAATATTA
  ATACAATCTC AGCCCTCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135808289	ENSMUSSNP1889898	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320936348	CHEV_3_125129949	CHEVERUD	SCREENING_POP	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51304779					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125220680 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584610	regulatory region 584610	833 bp distal