rs51306796 SNP Detail

Summary

• ID
  rs51306796
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:9813089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCGCAG TCCTGCTCCT
  GCTTGGCGTG CGTGAGTGTG TGAGTGTGTG TGTGTGAGTG AGTGTGGGAG CGCGCGCGCG
  CGTGTGGCCG GGGATCCCCG CGGTCCCTGG CGGAGAAGGG CGCAGGCAGA GGACCGCAGC
  TCCCTCCTGG CCCTTTCGCT GAAGGGCCAG CTCCGAGCTG GGCGTTCGGT TCCTCACTTG
  R
  TCAGCGGGAG CCCAGGAAAG AGCCTGGCCA CCGCGGTTCA CAACACTGGA GAAGCCAGGA
  TCCTAGGGCA CGCTTCTGCT GCGGTCGCCT AGGAGGATAG AGGAAAGCAG AGGCGCCCAC
  CACAGCAACT TAGGACTTGT TCTCAGCCAG CGAGACGCAA CGCAGCAACC CCCGCGCAAT
  CCGACGTTGT TTGGAGCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63642044	NES17050196	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51306796					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63642044	NES17050196	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9813089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7945	CpG island 7945	within coordinates
Gm30668	predicted gene, 30668	1984 bp downstream
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	mRNA-UTR
Rr511423	regulatory region 511423	1316 bp distal
Rr511424	regulatory region 511424	654 bp distal
Rr511425	regulatory region 511425	within coordinates
Rr511426	regulatory region 511426	275 bp proximal
Tssr139893	transcription start site region 139893	658 bp upstream
Tssr139894	transcription start site region 139894	213 bp upstream
Tssr139895	transcription start site region 139895	137 bp upstream
Tssr139896	transcription start site region 139896	74 bp downstream
Tssr139897	transcription start site region 139897	90 bp downstream
Tssr139898	transcription start site region 139898	123 bp downstream
Tssr139899	transcription start site region 139899	153 bp downstream
Tssr139900	transcription start site region 139900	187 bp downstream
Tssr139901	transcription start site region 139901	283 bp downstream
Tssr139902	transcription start site region 139902	301 bp downstream
Tssr139903	transcription start site region 139903	337 bp downstream
Tssr139904	transcription start site region 139904	403 bp downstream
Tssr139905	transcription start site region 139905	476 bp downstream
Tssr139906	transcription start site region 139906	581 bp downstream