rs51307354 SNP Detail

Summary

• ID
  rs51307354
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85387731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAACTGAT CAAATAAATC
  TGTGCCTAGC TCTGTACTCT CTGAACTCTT CATGCTGGTC TAAATTCCTT ACAGAGTTGC
  TGCGGTTGGG TTCCCAGCTC CCTTATTCTC TGCTGCTCTC TGGGCACAGG GGCCTGCCGC
  ATCTCCTACC CCATGAGAGC TTCATCTCCC GTAGCTTTGA CCTGTAGGCC AAAATGGTCC
  M
  AACTCCTAGA CTTCTGTGTG AGGGCCTGTC CCTCCAGTCT CATTCCCTTC CTGTCTAGTT
  ACTGTGACTG CAAGATCCCG CCGCTTTGGA AATTAGGCGC CCCCATCAAG CGGTCTGCGG
  GCGCCCTCTG CCGCCCGCTG TGAGAGAGGA CATTCTGCAT AGGCCTAGCC CTGCACCCTT
  ATTGGGTGTT TTCTTGAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906783	NES15956939	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51307354					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906783	NES15956939	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85387731 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17643	CpG island 17643	1307 bp distal
Rr633210	regulatory region 633210	1041 bp distal
Rr633211	regulatory region 633211	within coordinates
Rr633212	regulatory region 633212	118 bp proximal
Rr633213	regulatory region 633213	267 bp proximal
Rr633214	regulatory region 633214	445 bp proximal