rs51307404 SNP Detail

Summary

• ID
  rs51307404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:13834435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACACATA GCATTTAAAG
  GAGGGCTAGT TTATTTTGAG TCATGAGTTC AGAAGTTTTA GTCCAACAGG GTGAGGGGTT
  CATGGCAGGG CAGTACACTA CAAACCACTA TGGAAAGGGT ACAGAGTGAA AGAAACAGGG
  AATGTCCAGG GATAACATTA CCTAAAGATC CATCTCCAGT GACTTATTAG GTCCCAGTGT
  Y
  CAAAGTTTCC AGAATTTTTT GAAGCAGGAA GATTAAACAG TCAAAACATC AGCTTGTAGA
  GGAAATTTCA AATTCAAATC CCAACAGTTG GAGAATATAC TTTGTAAGAC TGAAATTCCT
  TTAACATTAT TGGGAAAGTT GCAGGGCTTA TTGTATGGGC TTTTTCTTCA AAGTAAGTCC
  ACTTGACAAA TATGCATACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52292845	NES15361446	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51307404					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52292845	NES15361446	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:13834435 () rs orientation: forward

Symbol	Name	Function Class
Gm38668	predicted gene, 38668	726 bp downstream