rs51307487 SNP Detail

Summary

• ID
  rs51307487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30332299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCACCCTG AGCCCCATGC
  CCCTCTAGGG ACCCTTCCAA CCCTACCTGT GCTGAGTGCC TCCTTCATCT TCACAGCACA
  GAAAGGCTGG CTTGCTTCGT CCTCAACTTG CAGGGAGCCC AGCTCATAGG AATTGAAGGA
  GATGCGCAGG AAGGGTGCCA TGATGGAGCC TGGAGTGAGA TTGTACAGTG AGCATGAAGC
  Y
  GAGGCAATAG AGCAACATGG TAGCTGCTTT TCTGTCAGTC TACCAAGCCA GGCCACTGTC
  CCCATTCCTG AATGGGGCCC TGGAAGCATT TGAGCCTGTG ATCCTTAGGC AATTACAGAA
  CAGCTGTACA TGCCAGGGAC CTCTGCACTC AGTGTTAGCA GCTGCCCTCT TGTCTCACTA
  GGCCCATGAA GCACCTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52709011	NES15548832	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51307487					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709011	NES15548832	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30332299 () rs orientation: forward

Symbol	Name	Function Class
Gm62449	predicted gene, 62449	795 bp downstream
Prkcd	protein kinase C, delta	within coordinates
Rr288069	regulatory region 288069	1502 bp proximal
Rr292185	regulatory region 292185	699 bp distal
Tssr127876	transcription start site region 127876	1165 bp upstream