rs51307882 SNP Detail

Summary

• ID
  rs51307882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98068462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCCTGTT CCTTCCCAAC
  TTAGATCCAA GGAACTCTGA GCTTTGAAAT AGGCTTGTCT ATAATCAGCA TCACTGGCCT
  TTCGTATCTA AGAGTGTTTG GTCCCATGAC TCCAGTGGAT AGTCAAAACT GTTGATGTTC
  AAGTCCTTAA CTGAAATGGC TTAGTAGTAA GACATAACCT ACCCATAACC CCACCCCGCT
  Y
  CCAACTCTTG GAGTTGCCTC TAGATGGTTT GCGACACCTC ATGTGCCGTC TTTACATTCC
  CATGGGGAGG AGTGAAAGCC AACTGCTTTC CTGAGCCTTC TGGAACTGAT TTTTCCACCT
  TTTCGATCCA AGGTTGGTTA GATTTCAACC TAGCATAAAA AACTCACAGC TACAGAGGGT
  TGATTGTTCC CATTCTTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145042261	ENSMUSSNP5505727	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51307882					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98068462 () rs orientation: forward

Symbol	Name	Function Class
Arhgef28	Rho guanine nucleotide exchange factor 28	within coordinates
Cpgi5995	CpG island 5995	797 bp distal
Rr277834	regulatory region 277834	462 bp distal