rs51308557 SNP Detail

Summary

• ID
  rs51308557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100823850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACTGAC ACTTTCTGAC
  TGCGTCAACC GGAGTCTATG TGGGGACCAT GACAGACACT TGCCAGTCAA CAGAAGTCAA
  ATCCAAAGGG TGAAACGTCA AAAATAAGAC CATGAAGACT TTTTCTACAA GAGCAGGTAG
  GTAAGTTACA GTGGGGCCGA TGCCTTGTGT AGTTTGAGTC CAGCCTTCGC CTCTATGGAG
  R
  GCTTGAAAAC TGACATCATT CTAACTGTCT AACTGTCACC TTCTCAAGGT TGGAAGCTGC
  CCATTTATCA CCAAGAGTCA GTATCGGGGA ACTATTTAAT GCCTGTTGTC TCTCATAATT
  ACATCACCTC ATAATCTATT CCTGCCTTCG TTGCTTCCCT CTTTCCTTCC TTTCTTTAAT
  GACCTTGAAC CTGCTATTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135542908	ENSMUSSNP1245084	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51308557					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100823850 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	1314 bp downstream
Rr581925	regulatory region 581925	309 bp proximal
Rr581926	regulatory region 581926	403 bp proximal