rs51309039 SNP Detail

Summary

• ID
  rs51309039
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55564570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGACAGTAA GGGTGCATTG TCTTATAAGC CTGGTGGCCT
  GAGTTTTATC ACCAGAGCCC CCACAAAGGC AGAAGGAGAG AACTGGCTCC ACAGAGTTGT
  S
  CTCTGACCTT CACACCACAC TGTGACACAC TCATAACACA AACCACATTT TTTTCTTTTT
  TTTTTTAAGA TTTATTTATT TATTTATTTA TTTATTACA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149036821	ENSMUSSNP2115350	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324345478	CHEV_13_55518118	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51309039					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55564570 () rs orientation: forward

Symbol	Name	Function Class
BC038268	cDNA sequence BC038268	1165 bp downstream
Cpgi5668	CpG island 5668	1416 bp distal
Cpgi5669	CpG island 5669	1473 bp proximal
F12	coagulation factor XII (Hageman factor)	1201 bp downstream
Pfn3	profilin 3	1525 bp upstream
Rr480459	regulatory region 480459	1194 bp distal
Rr480460	regulatory region 480460	1705 bp proximal
Tssr122694	transcription start site region 122694	1506 bp upstream