rs51309148 SNP Detail

Summary

• ID
  rs51309148
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135718693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTCAGTGC TGGCTGTATG TCCATTTACT
  CAAGGAGTGA GCCTTTGTTG AGCACCTACT ATGTGTGTTC CTGAGGGGAG AGGAAACAAA
  AGGATGGAGA CTGGGGTCTG CACTCTAGTT CCTCCTCGAG AAGGACATGA ACGATGTCAG
  Y
  GTTGGGGTGA AGTGTGGGAA AGAGGGGCAT GAAGGGGGTG GTAGGGCTAG GAGCAGGGGC
  ACCTAACATA ATCAGGGGTG GCTGGGCAGT GAGGCTTGGA GGAAGTCTGG AGGGAAGGAC
  GCCCTGACAG TAGTGTCAAA GCCTGTGGCG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145546436	ENSMUSSNP7032261	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss319993412	CHEV_1_137687532	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51309148					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135718693 () rs orientation: forward

Symbol	Name	Function Class
Rr372093	regulatory region 372093	1124 bp upstream
Rr419278	regulatory region 419278	1805 bp distal
Rr419279	regulatory region 419279	1987 bp distal
Rr419280	regulatory region 419280	654 bp distal
Rr419281	regulatory region 419281	929 bp distal
Rr419282	regulatory region 419282	1282 bp proximal
Rr419283	regulatory region 419283	1914 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron