rs51309721 SNP Detail

Summary

• ID
  rs51309721
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60631444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCGTCTAT ATGATAAGAT
  CATGGAATAG CTTCAGCTAA TCATTGGAGG AAGATCAGAT GCAGTCACTT AAGCCAAAGC
  CATCAGGATT TAAATGGGGG GGGGGGCGTT GTTGGTAAAA AGAAGCAAAA GCGACTCCTG
  TTATGAAGGT GCATAGATAA AATGCTCTTA GTAGTGAATA CAACAAACTG ATAATTCACA
  M
  GAAGATCTAT GAAAACATCA CCATCGCAAT CCTATGCTAA AAAAAAAATT CCTGTATTCT
  AAATTGTATT CTTAAATTCT TAAAGTACTG ATAATTCTCC CCTGGTATAG AAAAATGTTA
  TTTTAGTATT TCCACTGCAT TCTTCTGCGG ATTCTGGCTT TTCTTTTATG AAAGGGTCTC
  AACAAACTTG TGTATAGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63529558	NES17015461	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51309721					SNP	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63529558	NES17015461	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60631444 () rs orientation: forward

Symbol	Name	Function Class
Gm48947	predicted gene, 48947	636 bp upstream
Rr303268	regulatory region 303268	157 bp proximal
Rr313850	regulatory region 313850	158 bp proximal