rs51310354 SNP Detail

Summary

• ID
  rs51310354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:44661335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTGACG CCCCCCAATG
  AAAGGGCTAC TTAGTCCAGG CTGAGCCCAC TGGACTCTGT TTGTCCCCAT GCCATGCCAG
  GGGAGGCCAT TCAAGCAAAC CCTTTCTATG TCCCCAGCAA AAGGGGAGGG AAAGCCCAGG
  AGGAAAAGGC CCCTGTTTAG ACATCCACAA TCCTTCATCC CAAAGGAAAC TATTTCAGGG
  Y
  AGAGCATTCA GAGGAGCCTT TTATAAAGCA GGAGATGCTG AAATTCCTCC TTTCTATGTT
  TGTTGCCGCA GAGGCTGGCC TCTGGCTCAA ACTCCTTGGG CCGTTTGTGT TAACAGTAGT
  GGTTGGGTAC CTCTCTCAGA GAGTGTGGCG ACTGGTGGTC AGCAGTGGCC GGAAACTCAA
  AGGGGGAGCT GAAGCTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61784005	NES17519047	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51310354					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61784005	NES17519047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44661335 () rs orientation: forward

Symbol	Name	Function Class
Gm40930	predicted gene, 40930	within coordinates
Gm47792	predicted gene, 47792	1599 bp upstream
Rr271968	regulatory region 271968	1666 bp proximal
Rr276099	regulatory region 276099	1665 bp proximal
Rr283665	regulatory region 283665	1136 bp distal
Rr283666	regulatory region 283666	277 bp distal
Rr403740	regulatory region 403740	433 bp downstream