rs51310584 SNP Detail

Summary

• ID
  rs51310584
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26014395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGAGACACT AGTGACCAGG GCTAGGTCAC TGTGTATAGA
  AGGGATCCAT AGGTGGAGGT GGTTGCCAGG AGCCCCTCCC ATACCCTAGT GAGCACCTTT
  C
  AGTGCACATG TTTGGTTCAT CCTTTGCATT TGTAAAAGTT ACTGTTAATG AAACATTTTG
  GCAAAGCTAA AATCCAGGGT TTCCTACTGT GCTGAATAG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146382770	ENSMUSSNP710279	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51310584					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26014395 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11338	CpG island 11338	945 bp distal
Gm54107	predicted gene, 54107	1026 bp downstream
Nacc2	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	1572 bp upstream
Rr56450	regulatory region 56450	794 bp distal
Tssr23074	transcription start site region 23074	1618 bp upstream
Tssr23075	transcription start site region 23075	1545 bp upstream