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rs51313388 SNP Detail
Summary
  • ID
    rs51313388
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:46035958 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AATACCAGTC GGCTGCGTTG
    CTGTCACTAT GCGCAAGCGC AAGGTTGAAC ACTTGCGATA CGAGACTTTC TTTGAACTCT
    GTAACAGAAA ACAAAGGCCC AGCAAGGTCA ATATTTTGGT GAGGTCGCAC GGCCTGGAAG
    TGGAGGCACC CACTGTGAGC AGTGCTCCTT TATAGTGTCT CCTCTTAGTA GGGAACCACA
    Y
    GCAGACCCAC CAACTGATGC ATGCAGAGAG AGGGTCGCTC TCCAGGCCGC TACGGACTAG
    TAGAAGGGAC TTTTGCAACT GGTCTTGGCA AACATCCATG GGGCTAGAGA GATGGCTCAG
    TAGTTAAGAA CACTAGATGC TCTCTCTTCC AAAGGACCTG AGTTTGCTTC CCGGCATTCC
    GTGGTAAGCT GCTCACAACT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60259600 NES15753112 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs51313388 SNP C C C C C C T C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60259600 NES15753112 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:46035958 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9206 CpG island 9206 592 bp distal
Gm35456 predicted gene, 35456 within coordinates
Rr331486 regulatory region 331486 158 bp distal
Rr331487 regulatory region 331487 1843 bp proximal
Rr339880 regulatory region 339880 357 bp distal
Rr339881 regulatory region 339881 1042 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory