rs51314273 SNP Detail

Summary

• ID
  rs51314273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110365889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCCAGT TGCTGCATCT
  GATGAGAAAC AGGGCCAGCT CTGCACAGCT CTCAGATGTC AACATGGCTT CAGGTGACAG
  TCTAGACCAG GGATGTCTAC ATCAGAAGCA TACTTTTTAT AATCTTACAG ATTCACTATC
  TCAAATTTAA AATGTCACAT ATTTTAAAAA TAATTGCAAG GATAGTTGAC GAAATACTCA
  Y
  TGAGAACATT GATTTCAGAC AAAATCATTT TCCTGTGACC CTTCACATTT ACAGAATTGG
  GAGGTGCTAT TTGAGCAGAA TTATAATTTA ATAAGTGCAG AGACAGAGTT CTGTTTATCT
  TTGGGTATCT ATCTTCTTAG GAAACAAATA ACAACAGCCA GAGTCCTGGA GAGATGGCTC
  AGCAGTCAAG AGTACTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647248	ENSMUSSNP3838783	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss322398749	CHEV_7_117910196	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51314273					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110365889 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1524 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	1401 bp proximal
Rr653308	regulatory region 653308	1111 bp proximal
Rr653309	regulatory region 653309	1739 bp proximal
Tssr68503	transcription start site region 68503	1381 bp upstream
Tssr68504	transcription start site region 68504	1424 bp upstream
Tssr68505	transcription start site region 68505	1456 bp upstream
Tssr68506	transcription start site region 68506	1487 bp upstream
Tssr68507	transcription start site region 68507	1933 bp upstream