rs51314642 SNP Detail

Summary

• ID
  rs51314642
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81015139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTTGGTT CTGGCCTGCA
  TGGCTGGGCC TTCACCCTGA AGCAGTTTGC GGAGATGTAT GTGGCCAAGT TTGCAGCCAA
  GGGTGAGGGC CAGCTGAGCG CAGCCGAGCG TGCCAAGAAA GTAGAGGACA TGATGAAGAA
  GCTGTGGGGA GACCGGTGAG TACATGGCTG TGTGACTGTC TCTACCCCTG CTACTTGTGG
  M
  CAATGCCTGC CTGCCGATAC TATGTGACTG CTCTCTACAG GTACTTTGAT CCGGCCAATG
  GCAAGTTCAG TAAGTCAGCC AATAGCCCAG ATGGGAAAAA ACTTCCCCGC ACCTTCTGCC
  AGCTCATCCT GGACCCCATC TTCAAGGTGG GTAAGCTGTG GTCCTGGCCT GTGTTCCCAG
  CCTTGGGAAG TCGCTCCCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388478	NES15267096	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51314642					SNP	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388478	NES15267096	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81015139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	1129 bp distal
Eef2	eukaryotic translation elongation factor 2	within coordinates
Rr435544	regulatory region 435544	1746 bp distal
Rr435545	regulatory region 435545	370 bp proximal
Rr435546	regulatory region 435546	862 bp proximal
Snord37	small nucleolar RNA, C/D box 37	292 bp downstream
Tssr94696	transcription start site region 94696	1568 bp downstream
Tssr94697	transcription start site region 94697	1468 bp downstream
Tssr94698	transcription start site region 94698	1217 bp downstream
Tssr94699	transcription start site region 94699	100 bp downstream
Tssr94700	transcription start site region 94700	29 bp upstream
Tssr94701	transcription start site region 94701	89 bp upstream
Tssr94702	transcription start site region 94702	266 bp upstream
Tssr94703	transcription start site region 94703	329 bp upstream
Tssr94704	transcription start site region 94704	348 bp upstream
Tssr94705	transcription start site region 94705	376 bp upstream
Tssr94706	transcription start site region 94706	568 bp upstream
Tssr94707	transcription start site region 94707	618 bp upstream
Tssr94708	transcription start site region 94708	683 bp upstream
Tssr94709	transcription start site region 94709	937 bp upstream
Tssr98570	transcription start site region 98570	73 bp downstream
Tssr98571	transcription start site region 98571	441 bp downstream