rs51314783 SNP Detail

Summary

• ID
  rs51314783
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11173934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACACAGT GAGACCCCAC
  ATTTCAAAAA GTAAATAAAA GTATTTTTTA GAAGGTCAAA CGAGAGGGTA TAAAAGATGG
  AGAATGGAGA TGTGCCCACC TCTCTTTCCT CAACCCCCTT TCTCCAGACC GTGTCCATTT
  TGATGCTTAG CAAAAGTAAA GAGGCACACT GTTACCTCAC ATTTCAGTTG TCCCAAGACC
  Y
  AAGGATCCAG TTTCACCCTA TCAGGCCTAG GCACAGGCTG AAGAGAAGGA TCACCGTGGA
  TGGTGCTCTC AGCGCTAGAT CTGGCTGCAT AGCCATCAGA GGCAGCAGCG CGCAGTCTAG
  CTCCCAGGTG GTTGTCAAGC TCCTCAAGCC GCCGGGTTGT CAAGGGCAAC AGCCCTCTCT
  TAGGGCAGAG GGATGAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146048786	ENSMUSSNP1729417	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs51314783					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11173934 () rs orientation: forward

Symbol	Name	Function Class
4930526L06Rik	RIKEN cDNA 4930526L06 gene	247 bp upstream
Ms4a13	membrane-spanning 4-domains, subfamily A, member 13	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr158299	transcription start site region 158299	114 bp downstream
Tssr158300	transcription start site region 158300	130 bp downstream