rs51316009 SNP Detail

Summary

• ID
  rs51316009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:115669030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTCTAGG ACAATTCAAG
  GCTGGAAACA GGACTCAGGA GGTGCCAACA TTTCAATAAA ATGTGAGCTG CGCCGGGGCA
  GAGACTATTT TTTTTTTTTT TTTTTTTTTT TTTTTTACTG GTTTAGGTCA CAAAAGTTTC
  TCAGGGTCTC AGACCAGGGC CTGACACCCA GTGGGGACTC AAGGGGTATT TGGAAAATGA
  R
  TAAAATAAAC ATCAAGGGAA GGAATCTATA CATCAGTTAT TTTCTTTTCT TTTTTCTAGA
  TCATCACGTC AGGAGACTCT AGCACGAACC CCTTCATTGC TGTGAATATC TTGATTGCAG
  TTGGGTCTAT CATCATGGTT CTAGGTTTCC TGGGATGCTG TGGAGCTGTG AAAGAAAGCC
  GGTGCATGCT TCTCTTGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61319838	NES16926011	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51316009					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61319838	NES16926011	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115669030 () rs orientation: forward

Symbol	Name	Function Class
Rr385334	regulatory region 385334	135 bp upstream
Rr439263	regulatory region 439263	681 bp proximal
Tspan8	tetraspanin 8	Intron
Tssr95839	transcription start site region 95839	83 bp downstream