rs51316166 SNP Detail

Summary

• ID
  rs51316166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92490232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCATTACC TCACATTCTA
  CTAAAATTAT GTGGAATTCT CTACTTTCCT ACTCATATGT TAAATAAAAT ACTTCTACAA
  GATCAATTTT AAAAAATCTA TTTTCAAAAT GCAAAATTAT AGAAGGAAGA GGAGTAATAA
  ACGACCAATG TATTTCCTGT TTCAAAGCTT CCATTCACTA TTAAAAGATG TCCTGAGACT
  R
  TCTGTTGGCA GATAATCTAT GAAAAACTTA AAACTTTTGC CTAATATCCT CTCAGTGGTG
  AGTGCAAAAT GAATCTTAGT GAATGTACAG AAATAAAAAA AAAGCCTTAA AAAGAGAGAG
  TAGAGCATTA GTCAGTATTG GAAAGAAATA TAAATGAAAT GGGTTAAGAT TCTTAAACTG
  ATTTGCAACT GCAGTAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss52680819	NES15522603	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs51316166					SNP	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52680819	NES15522603	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92490232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	649 bp proximal
Dhfr	dihydrofolate reductase	1059 bp upstream
Msh3	mutS homolog 3	within coordinates
Rr403896	regulatory region 403896	776 bp upstream
Rr483661	regulatory region 483661	512 bp proximal
Rr483662	regulatory region 483662	793 bp proximal
Rr483663	regulatory region 483663	943 bp proximal
Rr483664	regulatory region 483664	1251 bp proximal
Tssr120622	transcription start site region 120622	1024 bp upstream
Tssr120623	transcription start site region 120623	1415 bp upstream
Tssr120624	transcription start site region 120624	1462 bp upstream
Tssr120625	transcription start site region 120625	1488 bp upstream
Tssr120626	transcription start site region 120626	1515 bp upstream
Tssr123429	transcription start site region 123429	779 bp downstream
Tssr123430	transcription start site region 123430	1219 bp downstream