rs51317274 SNP Detail

Summary

• ID
  rs51317274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:74920524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAGCTCC TGACTCCAGG
  TTCCTGCCCT GCTTGAGTTC CTGTCCTGAC TTCCTTTAAT AATGAGCTAC AATATGAAAG
  TATAACCCTT AACTCCCCAA GATGCTTCAG TCATGGTGTT TCATCACAGC AATAGAAATC
  CTGACTAAGA CAACATATAT CAACTTAGAT ACACTTTACT TCCAACACAG GATGTACAAT
  R
  CGAAGCCAGT ACCTTCCCTT TAAAACTTGT CTCTTCCTTC ACAAATTCTT ATGCCAGAAA
  CCTCCAGTGT TTTCCTTAGC TCCTAGTTAA TTCCTAGTTA ATTACTAAGT CCTGCCAATT
  CTGTCTCTCA GTATCTTAGG AATCCTCTAC TTCCTGTCCC CAATACTGCT GTCACCACCC
  ACCTTGTTTG CTCTCACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62461890	NES17263470	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51317274					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62461890	NES17263470	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:74920524 () rs orientation: forward

Symbol	Name	Function Class
Htr2a	5-hydroxytryptamine (serotonin) receptor 2A	within coordinates
Tssr126578	transcription start site region 126578	520 bp upstream