rs51318441 SNP Detail

Summary

• ID
  rs51318441
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42404427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTGAAG AGCAGTCAGT
  GCTCTTAGCC AGCAAGCTAT CTTTCCAGCT CTTATTATCT TTCTTCATTT GCCATCTTAG
  GAATGAAACC CAGGGACTCA CGCGTTAGAA GAATGCCCAT CCACAAAGAT AGGTACCGAT
  CTCTAGCGAT TCATCATTCG ATAGATGCTT AGGTTGCTAC TGTTCTTGAC TAACCACCTA
  S
  GATTATGTTG CTGAATTACA TAACTTAAGA TTTTGTTATT ACATTTGGGT ATGTGCATGT
  GTGCCTGCAG TCATGAGTGT CACAGCCAGG ACAGCTCTCA GGAGTGAGTT CTCTTTTTAC
  ACTGGAGGTA ATCAAATGAG GCTTGGCAGA CGTGCCTTTA CCCCCTGATC CATCTTGCCA
  GCCCATAACT ACGCCTGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61273596	NES16777581	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	G	C	G	C	C	G	G	C	C	G	G
ss147079708	ENSMUSSNP2109831	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51318441					SNP	G	G	C	C	C	G	C	G	C	C	G	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273596	NES16777581	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42404427 () rs orientation: forward

Symbol	Name	Function Class
Rr219442	regulatory region 219442	427 bp distal
Rr227589	regulatory region 227589	1828 bp distal
Snx3	sorting nexin 3	within coordinates