rs51319806 SNP Detail

Summary

• ID
  rs51319806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69885230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTG TTTGTTTGTT TGTTTTTAAT
  Y
  GCGGGGTTCA GCCTTGAAAG GAATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144574000	ENSMUSSNP6031673	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss324406493	CHEV_13_69875989	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51319806					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69885230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5814	CpG island 5814	834 bp proximal
Gm60959	predicted gene, 60959	1525 bp upstream
Rr482198	regulatory region 482198	1035 bp proximal
Tssr123143	transcription start site region 123143	1817 bp downstream
Tssr123144	transcription start site region 123144	1845 bp downstream
Tssr123145	transcription start site region 123145	1870 bp downstream
Ube2ql1	ubiquitin-conjugating enzyme E2Q family-like 1	within coordinates